Vectorizer Class Reference

#include <vectorizer.hpp>

Public Member Functions
	Vectorizer (const PathPositionHandleGraph *x)
	~Vectorizer ()
void	add_bv (bit_vector v)
void	add_name (string n)
void	emit (ostream &out, bool r_format, bool annotate)
bit_vector	alignment_to_onehot (Alignment a)
vector< int >	alignment_to_a_hot (Alignment a)
vector< double >	alignment_to_custom_score (Alignment a, std::function< double(Alignment)> lambda)
vector< double >	alignment_to_identity_hot (Alignment a)
string	output_wabbit_map ()
template<typename T>
string	format (T v)
template<typename T>
string	wabbitize (string name, T v)

Private Attributes
const PathPositionHandleGraph *	my_xg
unordered_map< vg::id_t, size_t >	id_to_rank
vector< bit_vector >	my_vectors
vector< string >	my_names
bool	output_tabbed = false
bool	output_names = false
unordered_map< string, int >	wabbit_map

Constructor & Destructor Documentation

Vectorizer()

Vectorizer::Vectorizer

(

const PathPositionHandleGraph *

x

)

~Vectorizer()

Vectorizer::~Vectorizer

(

)

Member Function Documentation

add_bv()

void Vectorizer::add_bv

(

bit_vector

v

)

add_name()

void Vectorizer::add_name

(

string

n

)

alignment_to_a_hot()

vector< int > Vectorizer::alignment_to_a_hot

(

Alignment

a

)

alignment_to_custom_score()

vector< double > Vectorizer::alignment_to_custom_score	(	Alignment	a,
		std::function< double(Alignment)>	lambda )

alignment_to_identity_hot()

vector< double > Vectorizer::alignment_to_identity_hot

(

Alignment

a

)

alignment_to_onehot()

bit_vector Vectorizer::alignment_to_onehot

(

Alignment

a

)

emit()

void Vectorizer::emit	(	ostream &	out,
		bool	r_format = false,
		bool	annotate = false )

TODO print header

format()

template<typename T>

string Vectorizer::format ( T v )

inline

output_wabbit_map()

string Vectorizer::output_wabbit_map

(

)

wabbitize()

template<typename T>

string Vectorizer::wabbitize ( string name, T v )

inline

Member Data Documentation

id_to_rank

unordered_map<vg::id_t, size_t> Vectorizer::id_to_rank

private

my_names

vector<string> Vectorizer::my_names

private

my_vectors

vector<bit_vector> Vectorizer::my_vectors

private

my_xg

const PathPositionHandleGraph* Vectorizer::my_xg

private

output_names

bool Vectorizer::output_names = false

private

output_tabbed

bool Vectorizer::output_tabbed = false

private

wabbit_map

unordered_map<string, int> Vectorizer::wabbit_map

private

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The documentation for this class was generated from the following files:

• src/vectorizer.hpp
• src/vectorizer.cpp