gfaz_to_handle.hpp File Reference

#include <compress/io/gfa_decoder.hpp>
#include <iostream>
#include <string>
#include <unordered_map>
#include <vector>
#include "gfa_to_handle.hpp"

Classes
class	vg::algorithms::GFAzParser
struct	vg::algorithms::GFAzParser::PendingRGFAVisit

Namespaces
namespace	vg
namespace	vg::algorithms

Functions
void	vg::algorithms::load_gfa_or_gfaz_to_handle_graph (const string &filename, MutableHandleGraph *graph, GFAIDMapInfo *translation)
void	vg::algorithms::load_gfa_or_gfaz_to_handle_graph (const string &filename, MutableHandleGraph *graph, const string &translation_filename)
void	vg::algorithms::load_gfa_or_gfaz_to_path_handle_graph (const string &filename, MutablePathMutableHandleGraph *graph, GFAIDMapInfo *translation, int64_t max_rgfa_rank, unordered_set< PathSense > *ignore_sense)
void	vg::algorithms::load_gfa_or_gfaz_to_path_handle_graph (const string &filename, MutablePathMutableHandleGraph *graph, int64_t max_rgfa_rank, const string &translation_filename, unordered_set< PathSense > *ignore_sense)

Detailed Description

Defines algorithms for copying data from GFAz files into handle graphs.