libpappsomspp
Library for mass spectrometry
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xicpeptideinterface.h
Go to the documentation of this file.
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/*******************************************************************************
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* Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
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*
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* This file is part of the PAPPSOms++ library.
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*
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* PAPPSOms++ is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* PAPPSOms++ is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
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*
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* Contributors:
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* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
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*implementation
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******************************************************************************/
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#pragma once
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#include "
qualifiedxic.h
"
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#include "../peptide/peptideinterface.h"
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namespace
pappso
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{
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class
XicPeptideInterface
:
public
QualifiedXic
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{
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private
:
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const
unsigned
int
m_z
;
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const
PeptideInterfaceSp
msp_peptideInterface
;
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protected
:
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XicPeptideInterface
(
const
MsRunId
&msrun_id,
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const
PeptideInterfaceSp
&peptideInterfaceSp,
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PrecisionPtr
precision,
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unsigned
int
charge);
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public
:
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~XicPeptideInterface
();
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virtual
unsigned
int
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getCharge
()
const
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{
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return
m_z
;
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};
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};
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}
// namespace pappso
pappso::MsRunId
MS run identity MsRunId identifies an MS run with a unique ID (XmlId) and contains eventually informa...
Definition
msrunid.h:54
pappso::PrecisionBase
Definition
precision.h:44
pappso::QualifiedXic
Definition
qualifiedxic.h:45
pappso::XicPeptideInterface
Definition
xicpeptideinterface.h:35
pappso::XicPeptideInterface::msp_peptideInterface
const PeptideInterfaceSp msp_peptideInterface
Definition
xicpeptideinterface.h:38
pappso::XicPeptideInterface::getCharge
virtual unsigned int getCharge() const
Definition
xicpeptideinterface.h:49
pappso::XicPeptideInterface::~XicPeptideInterface
~XicPeptideInterface()
Definition
xicpeptideinterface.cpp:41
pappso::XicPeptideInterface::m_z
const unsigned int m_z
Definition
xicpeptideinterface.h:37
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition
aa.cpp:39
pappso::PeptideInterfaceSp
std::shared_ptr< const PeptideInterface > PeptideInterfaceSp
Definition
peptideinterface.h:39
qualifiedxic.h
pappsomspp
xic
xicpeptideinterface.h
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