libpappsomspp
Library for mass spectrometry
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filterexclusionmz.h
Go to the documentation of this file.
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/**
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* \file pappsomspp/processing/filters/filterexclusionmz.h
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* \date 09/02/2021
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* \author Thomas Renne
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* \brief Delete small peaks in the exclusion range
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*/
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/*******************************************************************************
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* Copyright (c) 2021 Thomas Renne <thomas.renne@e.email>.
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*
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* This file is part of the PAPPSOms++ library.
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*
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* PAPPSOms++ is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* PAPPSOms++ is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
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*
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******************************************************************************/
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#pragma once
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#include "
filternameinterface.h
"
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#include "../../trace/trace.h"
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namespace
pappso
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{
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class
PMSPP_LIB_DECL
FilterMzExclusion
:
public
FilterNameInterface
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{
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public
:
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/**
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* Default constructor
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*/
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FilterMzExclusion
(
PrecisionPtr
precision_ptr);
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/**
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* @param strBuildParams string to build the filter
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* "mzExclusion|0.02dalton"
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*/
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FilterMzExclusion
(
const
QString &strBuildParams);
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/**
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* Copy constructor
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*
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* @param other TODO
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*/
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FilterMzExclusion
(
const
FilterMzExclusion
&other);
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/**
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* Destructor
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*/
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virtual
~FilterMzExclusion
();
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QString name()
const override
;
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QString toString()
const override
;
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/**
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* @brief get all the datapoints and remove different isotope and add their
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* intensity and change to charge = 1 when the charge is known
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* @return a list of datapoint
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*/
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Trace
&filter(
Trace
&data_points)
const override
;
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private
:
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void
buildFilterFromString(
const
QString &strBuildParams)
override
;
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Trace
removeTraceInExclusionMargin(
Trace
&points)
const
;
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private
:
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PrecisionPtr
m_exclusionPrecision
;
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};
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}
// namespace pappso
pappso::FilterMzExclusion
Definition
filterexclusionmz.h:37
pappso::FilterMzExclusion::m_exclusionPrecision
PrecisionPtr m_exclusionPrecision
Definition
filterexclusionmz.h:79
pappso::FilterNameInterface
Interface that allows to build filter objects from strings.
Definition
filternameinterface.h:42
pappso::PrecisionBase
Definition
precision.h:44
pappso::Trace
A simple container of DataPoint instances.
Definition
trace.h:148
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition
exportinmportconfig.h:14
filternameinterface.h
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition
aa.cpp:39
pappsomspp
processing
filters
filterexclusionmz.h
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