libpappsomspp
Library for mass spectrometry
Loading...
Searching...
No Matches
peptidemodificatortee.h
Go to the documentation of this file.
1
2/*******************************************************************************
3 * Copyright (c) 2016 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4 *
5 * This file is part of the PAPPSOms++ library.
6 *
7 * PAPPSOms++ is free software: you can redistribute it and/or modify
8 * it under the terms of the GNU General Public License as published by
9 * the Free Software Foundation, either version 3 of the License, or
10 * (at your option) any later version.
11 *
12 * PAPPSOms++ is distributed in the hope that it will be useful,
13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15 * GNU General Public License for more details.
16 *
17 * You should have received a copy of the GNU General Public License
18 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19 *
20 * Contributors:
21 * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
22 *implementation
23 ******************************************************************************/
24
25#pragma once
26
28#include "../pappsoexception.h"
29
30namespace pappso
31{
32
33
35{
36
37 public:
40 virtual ~PeptideModificatorTee();
41 void setPeptideSp(std::int8_t sequence_database_id,
42 const ProteinSp &protein_sp,
43 bool is_decoy,
44 const PeptideSp &peptide_sp_original,
45 unsigned int start,
46 bool is_nter,
47 unsigned int missed_cleavage_number,
48 bool semi_enzyme) override;
49
50 void addModificator(PeptideModificatorInterface *p_peptide_mod);
51
52
53 private:
54 std::list<PeptideModificatorInterface *> m_peptideModPtrList;
55};
56
57
58} // namespace pappso
std::list< PeptideModificatorInterface * > m_peptideModPtrList
#define PMSPP_LIB_DECL
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39
std::shared_ptr< const Peptide > PeptideSp
std::shared_ptr< const Protein > ProteinSp
shared pointer on a Protein object
Definition protein.h:47