31#include "../../msfile/msfileaccessor.h"
32#include "../../vendors/tims/timsdata.h"
54 massSpectrumSPtr(std::size_t spectrum_index)
override;
56 massSpectrumCstSPtr(std::size_t spectrum_index)
override;
59 qualifiedMassSpectrum(std::size_t spectrum_index,
60 bool want_binary_data =
true)
const override;
70 unsigned int ms_level)
override;
81 virtual std::size_t spectrumListSize()
const override;
83 virtual bool hasScanNumbers()
const override;
85 virtual bool releaseDevice()
override;
87 virtual bool acquireDevice()
override;
94 virtual Trace getTicChromatogram()
override;
95 virtual Trace computeTicChromatogram();
99 virtual void initialize()
override;
100 virtual bool accept(
const QString &file_name)
const override;
base class to read MSrun the only way to build a MsRunReader object is to use the MsRunReaderFactory
Class representing a fully specified mass spectrum.
interface to collect spectrums from the MsRunReader class
A simple container of DataPoint instances.
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
std::shared_ptr< const MsRunId > MsRunIdCstSPtr
std::shared_ptr< TimsData > TimsDataSp
shared pointer on a TimsData object
std::shared_ptr< const MassSpectrum > MassSpectrumCstSPtr
std::shared_ptr< MassSpectrum > MassSpectrumSPtr
std::shared_ptr< XicCoord > XicCoordSPtr