ProteoWizard
Reader_ABI.hpp
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1 //
2 // $Id$
3 //
4 //
5 // Original author: Matt Chambers <matt.chambers .@. vanderbilt.edu>
6 //
7 // Copyright 2009 Vanderbilt University - Nashville, TN 37232
8 //
9 // Licensed under the Apache License, Version 2.0 (the "License");
10 // you may not use this file except in compliance with the License.
11 // You may obtain a copy of the License at
12 //
13 // http://www.apache.org/licenses/LICENSE-2.0
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18 // See the License for the specific language governing permissions and
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21 
22 
23 #ifndef _READER_ABI_HPP_
24 #define _READER_ABI_HPP_
25 
26 
29 #include <boost/shared_ptr.hpp>
30 
31 
32 // WIFF usage is msvc only - mingw doesn't provide com support
33 #if (!defined(_MSC_VER) && defined(PWIZ_READER_ABI))
34 #undef PWIZ_READER_ABI
35 #endif
36 
37 
38 namespace pwiz {
39 namespace msdata {
40 
41 
43 {
44 
45  virtual std::string identify(const std::string& filename,
46  const std::string& head) const;
47 
48  virtual void read(const std::string& filename,
49  const std::string& head,
50  MSData& result,
51  int sampleIndex = 0,
52  const Config& config = Config()) const;
53 
54  virtual void read(const std::string& filename,
55  const std::string& head,
56  std::vector<MSDataPtr>& results,
57  const Config& config = Config()) const;
58 
59  virtual void readIds(const std::string& filename,
60  const std::string& head,
61  std::vector<std::string>& results,
62  const Config& config = Config()) const;
63 
64  virtual const char * getType() const {return "ABSciex WIFF";}
65 };
66 
67 
68 } // namespace msdata
69 } // namespace pwiz
70 
71 
72 #endif // _READER_ABI_HPP_
pwiz::msdata::Reader::Config
Reader configuration.
Definition: Reader.hpp:44
pwiz
Definition: ChromatogramList_Filter.hpp:36
pwiz::msdata::Reader
interface for file readers
Definition: Reader.hpp:38
pwiz::msdata::Reader_ABI::getType
virtual const char * getType() const
returns a unique string identifying the reader type
Definition: Reader_ABI.hpp:64
PWIZ_API_DECL
#define PWIZ_API_DECL
Definition: Export.hpp:32
Export.hpp
pwiz::msdata::Reader_ABI
Definition: Reader_ABI.hpp:42
pwiz::msdata::MSData
This is the root element of ProteoWizard; it represents the mzML element, defined as: intended to cap...
Definition: MSData.hpp:849
Reader.hpp
pwiz::identdata::IO::read
PWIZ_API_DECL void read(std::istream &is, CV &cv)