ProteoWizard
SpectrumList_LockmassRefiner.hpp
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1 //
2 // $Id$
3 //
4 //
5 // Original author: Matt Chambers <matt.chambers <a.t> vanderbilt.edu>
6 //
7 // Copyright 2008 Vanderbilt University - Nashville, TN 37232
8 //
9 // Licensed under the Apache License, Version 2.0 (the "License");
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21 
22 
23 #ifndef _SPECTRUMLIST_LOCKMASSREFINER_HPP_
24 #define _SPECTRUMLIST_LOCKMASSREFINER_HPP_
25 
26 
29 
30 
31 namespace pwiz {
32 namespace analysis {
33 
34 
35 /// SpectrumList implementation to replace peak profiles with picked peaks
37 {
38  public:
39 
40  SpectrumList_LockmassRefiner(const msdata::SpectrumListPtr& inner, double lockmassMzPosScans, double lockmassMzNegScans, double lockmassTolerance);
41 
42 
43  static bool accept(const msdata::SpectrumListPtr& inner);
44 
45  virtual msdata::SpectrumPtr spectrum(size_t index, msdata::DetailLevel detailLevel) const;
46  virtual msdata::SpectrumPtr spectrum(size_t index, bool getBinaryData = false) const;
47 
48  private:
49  double mzPositiveScans_, mzNegativeScans_, tolerance_;
50 };
51 
52 
53 } // namespace analysis
54 } // namespace pwiz
55 
56 
57 #endif // _SPECTRUMLIST_LOCKMASSREFINER_HPP_
pwiz::msdata::SpectrumListPtr
boost::shared_ptr< SpectrumList > SpectrumListPtr
Definition: MSData.hpp:711
pwiz
Definition: ChromatogramList_Filter.hpp:36
pwiz::msdata::SpectrumListWrapper
Inheritable pass-through implementation for wrapping a SpectrumList.
Definition: SpectrumListWrapper.hpp:37
PWIZ_API_DECL
#define PWIZ_API_DECL
Definition: Export.hpp:32
Export.hpp
pwiz::msdata::SpectrumPtr
boost::shared_ptr< Spectrum > SpectrumPtr
Definition: MSData.hpp:573
pwiz::analysis::SpectrumList_LockmassRefiner
SpectrumList implementation to replace peak profiles with picked peaks.
Definition: SpectrumList_LockmassRefiner.hpp:36
pwiz::msdata::DetailLevel
DetailLevel
Definition: MSData.hpp:630
pwiz::analysis::SpectrumList_LockmassRefiner::tolerance_
double tolerance_
Definition: SpectrumList_LockmassRefiner.hpp:49
SpectrumListWrapper.hpp