ProteoWizard
Reader_Bruker.hpp
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1 //
2 // $Id$
3 //
4 //
5 // Original author: Matt Chambers <matt.chambers .@. vanderbilt.edu>
6 //
7 // Copyright 2009 Vanderbilt University - Nashville, TN 37232
8 //
9 // Licensed under the Apache License, Version 2.0 (the "License");
10 // you may not use this file except in compliance with the License.
11 // You may obtain a copy of the License at
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13 // http://www.apache.org/licenses/LICENSE-2.0
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18 // See the License for the specific language governing permissions and
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21 
22 
23 #ifndef _READER_BRUKER_HPP_
24 #define _READER_BRUKER_HPP_
25 
26 
29 
30 
31 namespace pwiz {
32 namespace msdata {
33 
34 
36 {
37  public:
38 
39  virtual std::string identify(const std::string& filename,
40  const std::string& head) const;
41 
42  virtual void read(const std::string& filename,
43  const std::string& head,
44  MSData& result,
45  int runIndex = 0,
46  const Config& config = Config()) const;
47 
48  virtual void read(const std::string& filename,
49  const std::string& head,
50  std::vector<MSDataPtr>& results,
51  const Config& config = Config()) const
52  {
53  results.push_back(MSDataPtr(new MSData));
54  read(filename, head, *results.back(), 0, config);
55  }
56 
57  virtual const char * getType() const {return "Bruker Analysis";}
58 };
59 
60 
61 } // namespace msdata
62 } // namespace pwiz
63 
64 
65 #endif // _READER_BRUKER_HPP_
pwiz::msdata::Reader::Config
Reader configuration.
Definition: Reader.hpp:44
pwiz
Definition: ChromatogramList_Filter.hpp:36
pwiz::msdata::Reader
interface for file readers
Definition: Reader.hpp:38
PWIZ_API_DECL
#define PWIZ_API_DECL
Definition: Export.hpp:32
Export.hpp
pwiz::msdata::Reader_Bruker
Definition: Reader_Bruker.hpp:35
pwiz::msdata::MSDataPtr
boost::shared_ptr< MSData > MSDataPtr
Definition: MSData.hpp:913
pwiz::msdata::Reader_Bruker::read
virtual void read(const std::string &filename, const std::string &head, std::vector< MSDataPtr > &results, const Config &config=Config()) const
fill in a vector of MSData structures; provides support for multi-run input files
Definition: Reader_Bruker.hpp:48
pwiz::msdata::Reader_Bruker::getType
virtual const char * getType() const
returns a unique string identifying the reader type
Definition: Reader_Bruker.hpp:57
pwiz::msdata::MSData
This is the root element of ProteoWizard; it represents the mzML element, defined as: intended to cap...
Definition: MSData.hpp:849
Reader.hpp
pwiz::identdata::IO::read
PWIZ_API_DECL void read(std::istream &is, CV &cv)