ProteoWizard
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#include "pwiz/utility/misc/Export.hpp"
#include "IdentData.hpp"
#include "pwiz/utility/misc/IterationListener.hpp"
Go to the source code of this file.
Classes | |
class | pwiz::identdata::Serializer_pepXML |
MZIDData <-> pepXML stream serialization. More... | |
struct | pwiz::identdata::Serializer_pepXML::Config |
Serializer_pepXML configuration. More... | |
struct | pwiz::identdata::PepXMLSpecificity |
Namespaces | |
pwiz | |
pwiz::identdata | |
Functions | |
PWIZ_API_DECL PepXMLSpecificity | pwiz::identdata::pepXMLSpecificity (const Enzyme &ez) |
converts an identdata::Enzyme into a pepXML cut/no_cut/sense tuple More... | |
PWIZ_API_DECL std::string | pwiz::identdata::stripChargeFromConventionalSpectrumId (const std::string &id) |
strips charge state from known conventions of the pepXML spectrum attribute; used to find a unique identifier for a spectrum in order to merge charge states More... | |
PWIZ_API_DECL CVID | pwiz::identdata::pepXMLSoftwareNameToCVID (const std::string &softwareName) |
converts a software name stored in pepXML software element into its corresponding CVID, or CVID_Unknown if no mapping was found More... | |
const PWIZ_API_DECL std::string & | pwiz::identdata::softwareCVIDToPepXMLSoftwareName (CVID softwareCVID) |
converts a software CVID to the preferred name for that software in pepXML; an unrecognized software name will return an empty string More... | |
PWIZ_API_DECL CVID | pwiz::identdata::pepXMLScoreNameToCVID (CVID softwareCVID, const std::string &scoreName) |
for a given software CVID, converts a pepXML score name into its corresponding CVID, or CVID_Unknown if no mapping was found More... | |
const PWIZ_API_DECL std::string & | pwiz::identdata::scoreCVIDToPepXMLScoreName (CVID softwareCVID, CVID scoreCVID) |
for a given software CVID, converts a score CVID into the preferred name for that score in pepXML; an invalid combination of software/score will return an empty string More... | |
PWIZ_API_DECL CVID | pwiz::identdata::nativeIdStringToCVID (const std::string &id) |
attempts to convert a period-delimited id into a nativeID format (e.g. "1.0.123" appears to be a Thermo nativeID) More... | |