ProteoWizard
pwiz
analysis
peakdetect
FeatureDetectorSimple.hpp
Go to the documentation of this file.
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//
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// $Id$
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//
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//
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// Original author: Kate Hoff <Katherine.Hoff@cshs.org>
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//
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// Copyright 2008 Spielberg Family Center for Applied Proteomics
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// Cedars-Sinai Medical Cnter, Los Angeles, California 90048
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//
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// Licensed under the Apache License, Version 2.0 (the "License");
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// you may not use this file except in compliance with the License.
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// You may obtain a copy of the License at
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//
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// http://www.apache.org/licenses/LICENSE-2.0
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//
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// Unless required by applicable law or agreed to in writing, software
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// distributed under the License is distributed on an "AS IS" BASIS,
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// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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// See the License for the specific language governing permissions and
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// limitations under the License.
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//
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#ifndef _FEATUREDETECTORSIMPLE_HPP_
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#define _FEATUREDETECTORSIMPLE_HPP_
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#include "
FeatureDetector.hpp
"
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#include "
pwiz/analysis/peakdetect/PeakFamilyDetector.hpp
"
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#include "
pwiz/data/misc/PeakData.hpp
"
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namespace
pwiz
{
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namespace
analysis{
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using namespace
pwiz::data::peakdata
;
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/// FeatureDetectorSimple detects 'rectangular' features, ie number of peaks in
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/// isotope envelope is the same for each scan included in the feature
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class
PWIZ_API_DECL
FeatureDetectorSimple
:
public
FeatureDetector
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{
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public
:
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FeatureDetectorSimple
(boost::shared_ptr<PeakFamilyDetector> _pfd);
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virtual
void
detect(
const
MSData
& msd,
FeatureField
& result)
const
;
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private
:
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class
Impl;
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boost::shared_ptr<Impl>
_pimpl
;
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FeatureDetectorSimple
(
const
FeatureDetectorSimple
&);
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FeatureDetectorSimple
& operator=(
const
FeatureDetectorSimple
&);
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};
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}
// namespace analysis
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}
// namespace pwiz
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#endif // _FEATUREDETECTORSIMPLE_HPP_
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pwiz
Definition:
ChromatogramList_Filter.hpp:36
pwiz::data::peakdata
Definition:
PeakData.hpp:40
pwiz::analysis::MZRTField
MZRTField is a std::set of boost::shared_ptrs, stored as a binary tree ordered by LessThan_MZRT.
Definition:
MZRTField.hpp:94
PWIZ_API_DECL
#define PWIZ_API_DECL
Definition:
Export.hpp:32
pwiz::analysis::FeatureDetectorSimple
FeatureDetectorSimple detects 'rectangular' features, ie number of peaks in isotope envelope is the s...
Definition:
FeatureDetectorSimple.hpp:39
pwiz::analysis::FeatureDetectorSimple::_pimpl
boost::shared_ptr< Impl > _pimpl
Definition:
FeatureDetectorSimple.hpp:48
PeakData.hpp
pwiz::analysis::FeatureDetector
Definition:
FeatureDetector.hpp:37
FeatureDetector.hpp
pwiz::msdata::MSData
This is the root element of ProteoWizard; it represents the mzML element, defined as: intended to cap...
Definition:
MSData.hpp:849
PeakFamilyDetector.hpp
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