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23 #ifndef _TRADATA_IO_HPP_
24 #define _TRADATA_IO_HPP_
112 #endif // _TRADATA_IO_HPP_
Uncontrolled user parameters (essentially allowing free text). Before using these,...
boost::shared_ptr< Compound > CompoundPtr
The XMLWriter class provides simple, tag-level XML syntax writing.
const PWIZ_API_DECL Modification & modification(CVID cvid)
find a modification by CVID
Product (Q3) of the transition.
Information about an ontology or CV source and a short 'lookup' tag to refer to.
A possible interpration of the product ion for a transition.
Chemical compound other than a peptide for which one or more transitions.
Peptide for which one or more transitions are intended to identify.
A peptide or compound that is to be included or excluded from a target list of precursor m/z values.
PWIZ_API_DECL void write(minimxml::XMLWriter &writer, const CV &cv)
represents a post-translational modification (PTM) modification formula or masses must be provided at...
const PWIZ_API_DECL CV & cv(const std::string &prefix)
returns a CV object for the specified namespace (prefix); currently supported namespaces are: MS UO
PWIZ_API_DECL proteome::Peptide peptide(const Peptide &peptide)
creates a proteome::Peptide from an identdata::Peptide
Instrument on which transitions are validated.
KernelTraitsBase< Kernel >::space_type::abscissa_type x
PWIZ_API_DECL void read(std::istream &is, CV &cv)
boost::shared_ptr< Protein > ProteinPtr
Precursor (Q1) of the transition.
Instrument configuration used in the validation or optimization of the transitions.
represents a tag-value pair, where the tag comes from the controlled vocabulary
boost::shared_ptr< Peptide > PeptidePtr