@_tenum_t _tSBMLErrorCode_t_t _tCodes_t _tfor_t _tall_t _tSBML_t-_tlevel_t _terrors_t _tand_t _twarnings_t _tfrom_t _tthe_t _tcore_t _tspecification_t.
Enumerator |
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UnknownError | Encountered unknown internal libSBML error.
|
NotUTF8 | File does not use UTF-8 encoding.
|
UnrecognizedElement | Encountered unrecognized element.
|
NotSchemaConformant | Document does not conform to the SBML XML schema.
|
L3NotSchemaConformant | Document is not well-formed XML.
|
InvalidMathElement | Invalid MathML.
|
DisallowedMathMLSymbol | Disallowed MathML symbol found.
|
DisallowedMathMLEncodingUse | Use of the MathML 'encoding' attribute is not allowed on this element.
|
DisallowedDefinitionURLUse | Use of the MathML 'definitionURL' attribute is not allowed on this element.
|
BadCsymbolDefinitionURLValue | Invalid <csymbol> 'definitionURL' attribute value.
|
DisallowedMathTypeAttributeUse | Use of the MathML 'type' attribute is not allowed on this element.
|
DisallowedMathTypeAttributeValue | Disallowed MathML 'type' attribute value.
|
LambdaOnlyAllowedInFunctionDef | Use of <lambda> not permitted outside of FunctionDefinition objects.
|
BooleanOpsNeedBooleanArgs | Non-Boolean argument given to Boolean operator.
|
NumericOpsNeedNumericArgs | Non-numerical argument given to numerical operator.
|
ArgsToEqNeedSameType | Arguments to <eq> and <neq> must have the same data types.
|
PiecewiseNeedsConsistentTypes | Terms in a <piecewise> expression must have consistent data types.
|
PieceNeedsBoolean | The second argument of a <piece> expression must yield a Boolean value.
|
ApplyCiMustBeUserFunction | A <ci> element in this context must refer to a function definition.
|
ApplyCiMustBeModelComponent | A <ci> element in this context must refer to a model component.
|
KineticLawParametersAreLocalOnly | Cannot use a KineticLaw local parameter outside of its local scope.
|
MathResultMustBeNumeric | A formula's result in this context must be a numerical value.
|
OpsNeedCorrectNumberOfArgs | Incorrect number of arguments given to MathML operator.
|
InvalidNoArgsPassedToFunctionDef | Incorrect number of arguments given to function invocation.
|
DisallowedMathUnitsUse | Attribute 'units' is only permitted on <cn> elements.
|
InvalidUnitsValue | Invalid value given for the 'units' attribute.
|
CiCannotReference0DCompartment | A <ci> element cannot reference a 0D compartment.
|
RateOfTargetMustBeCi | A 'rateOf' <csymbol> must target only a single <ci> element.
|
RateOfTargetCannotBeAssigned | The target of a 'rateOf' <csymbol> cannot be assigned.
|
RateOfSpeciesTargetCompartmentNot | Compartments of non-substance <species> referenced by 'rateOf' must not vary.
|
DuplicateComponentId | Duplicate 'id' attribute value.
|
DuplicateUnitDefinitionId | Duplicate unit definition 'id' attribute value.
|
DuplicateLocalParameterId | Duplicate local parameter 'id' attribute value.
|
MultipleAssignmentOrRateRules | Multiple rules for the same variable are not allowed.
|
MultipleEventAssignmentsForId | Multiple event assignments for the same variable are not allowed.
|
EventAndAssignmentRuleForId | An event assignment and an assignment rule must not have the same value for 'variable'.
|
DuplicateMetaId | Duplicate 'metaid' attribute value.
|
InvalidSBOTermSyntax | Invalid syntax for an 'sboTerm' attribute value.
|
InvalidMetaidSyntax | Invalid syntax for a 'metaid' attribute value.
|
InvalidIdSyntax | Invalid syntax for an 'id' attribute value.
|
InvalidUnitIdSyntax | Invalid syntax for the identifier of a unit.
|
InvalidNameSyntax | Invalid syntax for a 'name' attribute value.
|
DanglingUnitReference | Dangling reference to a unit.
|
MissingAnnotationNamespace | Missing declaration of the XML namespace for the annotation.
|
DuplicateAnnotationNamespaces | Multiple annotations using the same XML namespace.
|
SBMLNamespaceInAnnotation | The SBML XML namespace cannot be used in an Annotation object.
|
MultipleAnnotations | Only one Annotation object is permitted under a given SBML object.
|
InconsistentArgUnits | The units of the function call's arguments are not consistent with its definition.
|
InconsistentKineticLawUnitsL3 | The kinetic law's units are inconsistent with those of other kinetic laws in the model.
|
AssignRuleCompartmentMismatch | Mismatched units in assignment rule for compartment.
|
AssignRuleSpeciesMismatch | Mismatched units in assignment rule for species.
|
AssignRuleParameterMismatch | Mismatched units in assignment rule for parameter.
|
AssignRuleStoichiometryMismatch | Mismatched units in assignment rule for stoichiometry.
|
InitAssignCompartmenMismatch | Mismatched units in initial assignment to compartment.
|
InitAssignSpeciesMismatch | Mismatched units in initial assignment to species.
|
InitAssignParameterMismatch | Mismatched units in initial assignment to parameter.
|
InitAssignStoichiometryMismatch | Mismatched units in initial assignment to stoichiometry.
|
RateRuleCompartmentMismatch | Mismatched units in rate rule for compartment.
|
RateRuleSpeciesMismatch | Mismatched units in rate rule for species.
|
RateRuleParameterMismatch | Mismatched units in rate rule for parameter.
|
RateRuleStoichiometryMismatch | Mismatched units in rate rule for stoichiometry.
|
KineticLawNotSubstancePerTime | The units of the kinetic law are not 'substance'/'time'.
|
SpeciesInvalidExtentUnits | The species' units are not consistent with units of extent.
|
DelayUnitsNotTime | The units of the delay expression are not units of time.
|
EventAssignCompartmentMismatch | Mismatched units in event assignment for compartment.
|
EventAssignSpeciesMismatch | Mismatched units in event assignment for species.
|
EventAssignParameterMismatch | Mismatched units in event assignment for parameter.
|
EventAssignStoichiometryMismatch | Mismatched units in event assignment for stoichiometry.
|
PriorityUnitsNotDimensionless | The units of a priority expression must be 'dimensionless'.
|
UpperUnitBound | Upper boundary of unit validation diagnostic codes.
|
OverdeterminedSystem | The model is overdetermined.
|
InvalidModelSBOTerm | Invalid 'sboTerm' attribute value for a Model object.
|
InvalidFunctionDefSBOTerm | Invalid 'sboTerm' attribute value for a FunctionDefinition object.
|
InvalidParameterSBOTerm | Invalid 'sboTerm' attribute value for a Parameter object.
|
InvalidInitAssignSBOTerm | Invalid 'sboTerm' attribute value for an InitialAssignment object.
|
InvalidRuleSBOTerm | Invalid 'sboTerm' attribute value for a Rule object.
|
InvalidConstraintSBOTerm | Invalid 'sboTerm' attribute value for a Constraint object.
|
InvalidReactionSBOTerm | Invalid 'sboTerm' attribute value for a Reaction object.
|
InvalidSpeciesReferenceSBOTerm | Invalid 'sboTerm' attribute value for a SpeciesReference object.
|
InvalidKineticLawSBOTerm | Invalid 'sboTerm' attribute value for a KineticLaw object.
|
InvalidEventSBOTerm | Invalid 'sboTerm' attribute value for an Event object.
|
InvalidEventAssignmentSBOTerm | Invalid 'sboTerm' attribute value for an EventAssignment object.
|
InvalidCompartmentSBOTerm | Invalid 'sboTerm' attribute value for a Compartment object.
|
InvalidSpeciesSBOTerm | Invalid 'sboTerm' attribute value for a Species object.
|
InvalidCompartmentTypeSBOTerm | Invalid 'sboTerm' attribute value for a CompartmentType object.
|
InvalidSpeciesTypeSBOTerm | Invalid 'sboTerm' attribute value for a SpeciesType object.
|
InvalidTriggerSBOTerm | Invalid 'sboTerm' attribute value for an Event Trigger object.
|
InvalidDelaySBOTerm | Invalid 'sboTerm' attribute value for an Event Delay object.
|
InvalidLocalParameterSBOTerm | Invalid 'sboTerm' attribute value for a LocalParameter object.
|
InvalidSBMLElementSBOTerm | Invalid 'sboTerm' attribute value for the <sbml> element.
|
NotesNotInXHTMLNamespace | Notes must be placed in the XHTML XML namespace.
|
NotesContainsXMLDecl | XML declarations are not permitted in Notes objects.
|
NotesContainsDOCTYPE | XML DOCTYPE elements are not permitted in Notes objects.
|
InvalidNotesContent | Invalid notes content found.
|
OnlyOneNotesElementAllowed | Only one Notes subobject is permitted on a given SBML object.
|
InvalidNamespaceOnSBML | Invalid XML namespace for the SBML container element.
|
MissingOrInconsistentLevel | Missing or inconsistent value for the 'level' attribute.
|
MissingOrInconsistentVersion | Missing or inconsistent value for the 'version' attribute.
|
PackageNSMustMatch | Inconsistent or invalid SBML Level/Version for the package namespace declaration.
|
LevelPositiveInteger | The 'level' attribute must have a positive integer value.
|
VersionPositiveInteger | The 'version' attribute must have a positive integer value.
|
AllowedAttributesOnSBML | Invalid attribute found on the SBML container element.
|
L3PackageOnLowerSBML | An L3 package ns found on the SBML container element.
|
MissingModel | No model definition found.
|
IncorrectOrderInModel | Incorrect ordering of components within the Model object.
|
EmptyListElement | Empty ListOf___ object found.
|
NeedCompartmentIfHaveSpecies | The presence of a species requires a compartment.
|
OneOfEachListOf | Only one of each kind of ListOf___ object is allowed inside a Model object.
|
OnlyFuncDefsInListOfFuncDefs | Only FunctionDefinition, Notes and Annotation objects are allowed in ListOfFunctionDefinitions.
|
OnlyUnitDefsInListOfUnitDefs | Only UnitDefinition, Notes and Annotation objects are allowed in ListOfUnitDefinitions objects.
|
OnlyCompartmentsInListOfCompartments | Only Compartment, Notes and Annotation objects are allowed in ListOfCompartments objects.
|
OnlySpeciesInListOfSpecies | Only Species, Notes and Annotation objects are allowed in ListOfSpecies objects.
|
OnlyParametersInListOfParameters | Only Parameter, Notes and Annotation objects are allowed in ListOfParameters objects.
|
OnlyInitAssignsInListOfInitAssigns | Only InitialAssignment, Notes and Annotation objects are allowed in ListOfInitialAssignments objects.
|
OnlyRulesInListOfRules | Only Rule, Notes and Annotation objects are allowed in ListOfRules objects.
|
OnlyConstraintsInListOfConstraints | Only Constraint, Notes and Annotation objects are allowed in ListOfConstraints objects.
|
OnlyReactionsInListOfReactions | Only Reaction, Notes and Annotation objects are allowed in ListOfReactions objects.
|
OnlyEventsInListOfEvents | Only Event, Notes and Annotation objects are allowed in ListOfEvents objects.
|
L3ConversionFactorOnModel | A 'conversionFactor' attribute value must reference a Parameter object.
|
L3TimeUnitsOnModel | Invalid 'timeUnits' attribute value.
|
L3VolumeUnitsOnModel | Invalid 'volumeUnits' attribute value.
|
L3AreaUnitsOnModel | Invalid 'areaUnits' attribute value.
|
L3LengthUnitsOnModel | Invalid 'lengthUnits' attribute value.
|
L3ExtentUnitsOnModel | Invalid 'extentUnits' attribute value.
|
AllowedAttributesOnModel | Invalid attribute found on the Model object.
|
AllowedAttributesOnListOfFuncs | Invalid attribute found on the ListOfFunctionDefinitions object.
|
AllowedAttributesOnListOfUnitDefs | Invalid attribute found on the ListOfUnitDefinitions object.
|
AllowedAttributesOnListOfComps | Invalid attribute found on the ListOfCompartments object.
|
AllowedAttributesOnListOfSpecies | Invalid attribute found on the ListOfSpecies object.
|
AllowedAttributesOnListOfParams | Invalid attribute found on the ListOfParameters object.
|
AllowedAttributesOnListOfInitAssign | Invalid attribute found on the ListOfInitialAssignments object.
|
AllowedAttributesOnListOfRules | Invalid attribute found on the ListOfRules object.
|
AllowedAttributesOnListOfConstraints | Invalid attribute found on the ListOfConstraints object.
|
AllowedAttributesOnListOfReactions | Invalid attribute found on the ListOfReactions object.
|
AllowedAttributesOnListOfEvents | Invalid attribute found on the ListOfEvents object.
|
L3V2SubstanceUnitsOnModel | Invalid 'substanceUnits' attribute value.
|
FunctionDefMathNotLambda | Invalid expression found in the function definition.
|
InvalidApplyCiInLambda | Invalid forward reference in the MathML <apply> <ci> ...</ci> </apply> expression.
|
RecursiveFunctionDefinition | Recursive function definitions are not permitted.
|
InvalidCiInLambda | Invalid <ci> reference found inside the <lambda> mathematical formula.
|
InvalidFunctionDefReturnType | A function's return type must be either a number or a Boolean.
|
OneMathElementPerFunc | A FunctionDefinition object may contain one <math> element.
|
AllowedAttributesOnFunc | Invalid attribute found on the FunctionDefinition object.
|
OnlyCiInsideBVar | |
InvalidUnitDefId | Invalid 'id' attribute value for a UnitDefinition object.
|
InvalidSubstanceRedefinition | Invalid redefinition of built-in type 'substance'.
|
InvalidLengthRedefinition | Invalid redefinition of built-in type 'length'.
|
InvalidAreaRedefinition | Invalid redefinition of built-in type name 'area'.
|
InvalidTimeRedefinition | Invalid redefinition of built-in type name 'time'.
|
InvalidVolumeRedefinition | Invalid redefinition of built-in type name 'volume'.
|
VolumeLitreDefExponentNotOne | Must use 'exponent'=1 when defining 'volume' in terms of litres.
|
VolumeMetreDefExponentNot3 | Must use 'exponent'=3 when defining 'volume' in terms of metres.
|
EmptyListOfUnits | An empty list of Unit objects is not permitted in a UnitDefinition object.
|
InvalidUnitKind | Invalid value for the 'kind' attribute of a UnitDefinition object.
|
OffsetNoLongerValid | Unit attribute 'offset' is not supported in this Level+Version of SBML.
|
CelsiusNoLongerValid | Unit name 'Celsius' is not defined in this Level+Version of SBML.
|
EmptyUnitListElement | A ListOfUnits object must not be empty.
|
OneListOfUnitsPerUnitDef | At most one ListOfUnits object is allowed inside a UnitDefinition object.
|
OnlyUnitsInListOfUnits | Only Unit, Notes and Annotation objects are allowed in ListOfUnits objects.
|
AllowedAttributesOnUnitDefinition | Invalid attribute found on the UnitDefinition object.
|
AllowedAttributesOnListOfUnits | Invalid attribute found on the ListOfUnits object.
|
AllowedAttributesOnUnit | Invalid attribute found on the Unit object.
|
ZeroDimensionalCompartmentSize | Invalid use of the 'size' attribute for a zero-dimensional compartment.
|
ZeroDimensionalCompartmentUnits | Invalid use of the 'units' attribute for a zero-dimensional compartment.
|
ZeroDimensionalCompartmentConst | Zero-dimensional compartments must be defined to be constant.
|
UndefinedOutsideCompartment | Invalid value for the 'outside' attribute of a Compartment object.
|
RecursiveCompartmentContainment | Recursive nesting of compartments via the 'outside' attribute is not permitted.
|
ZeroDCompartmentContainment | Invalid nesting of zero-dimensional compartments.
|
Invalid1DCompartmentUnits | Invalid value for the 'units' attribute of a one-dimensional compartment.
|
Invalid2DCompartmentUnits | Invalid value for the 'units' attribute of a two-dimensional compartment.
|
Invalid3DCompartmentUnits | Invalid value for the 'units' attribute of a three-dimensional compartment.
|
InvalidCompartmentTypeRef | Invalid value for the 'compartmentType' attribute of a compartment.
|
OneDimensionalCompartmentUnits | No units defined for 1-D compartment.
|
TwoDimensionalCompartmentUnits | No units defined for 2-D compartment.
|
ThreeDimensionalCompartmentUnits | No units defined for 3-D Compartment object.
|
AllowedAttributesOnCompartment | Invalid attribute found on Compartment object.
|
NoUnitsOnCompartment | No units defined for Compartment object.
|
InvalidSpeciesCompartmentRef | Invalid value found for Species 'compartment' attribute.
|
HasOnlySubsNoSpatialUnits | Attribute 'spatialSizeUnits' must not be set if 'hasOnlySubstanceUnits'='true'.
|
NoSpatialUnitsInZeroD | Attribute 'spatialSizeUnits' must not be set if the compartment is zero-dimensional.
|
NoConcentrationInZeroD | Attribute 'initialConcentration' must not be set if the compartment is zero-dimensional.
|
SpatialUnitsInOneD | Invalid value for 'spatialSizeUnits' attribute of a one-dimensional compartment.
|
SpatialUnitsInTwoD | Invalid value for the 'spatialSizeUnits' attribute of a two-dimensional compartment.
|
SpatialUnitsInThreeD | Invalid value for the 'spatialSizeUnits' attribute of a three-dimensional compartment.
|
InvalidSpeciesSusbstanceUnits | Invalid value for a Species 'units' attribute.
|
BothAmountAndConcentrationSet | Cannot set both 'initialConcentration' and 'initialAmount' attributes simultaneously.
|
NonBoundarySpeciesAssignedAndUsed | Cannot use a non-boundary species in both reactions and rules simultaneously.
|
NonConstantSpeciesUsed | Cannot use a constant, non-boundary species as a reactant or product.
|
InvalidSpeciesTypeRef | Invalid value for the 'speciesType' attribute of a species.
|
MultSpeciesSameTypeInCompartment | Cannot have multiple species of the same species type in the same compartment.
|
MissingSpeciesCompartment | Missing value for the 'compartment' attribute.
|
SpatialSizeUnitsRemoved | Attribute 'spatialSizeUnits' is not supported in this Level+Version of SBML.
|
SubstanceUnitsOnSpecies | No substance units defined for the species.
|
ConversionFactorOnSpecies | Invalid value for the 'conversionFactor' attribute.
|
AllowedAttributesOnSpecies | Invalid attribute found on Species object.
|
InvalidParameterUnits | Invalid value for the 'units' attribute of a Parameter object.
|
ParameterUnits | No units defined for the parameter.
|
ConversionFactorMustConstant | A conversion factor must reference a Parameter object declared to be a constant.
|
AllowedAttributesOnParameter | Invalid attribute found on Parameter object.
|
InvalidInitAssignSymbol | Invalid value for the 'symbol' attribute of an InitialAssignment object.
|
MultipleInitAssignments | Multiple initial assignments for the same 'symbol' value are not allowed.
|
InitAssignmentAndRuleForSameId | Cannot set a value using both an initial assignment and an assignment rule simultaneously.
|
OneMathElementPerInitialAssign | An InitialAssignment object may contain one <math> element.
|
AllowedAttributesOnInitialAssign | Invalid attribute found on an InitialAssignment object.
|
InitAssignmentCannotRef0DComp | InitialAssignment cannot reference 0D compartment.
|
InvalidAssignRuleVariable | Invalid value for the 'variable' attribute of an AssignmentRule object.
|
InvalidRateRuleVariable | Invalid value for the 'variable' attribute of a RateRule object.
|
AssignmentToConstantEntity | An assignment rule cannot assign an entity declared to be constant.
|
RateRuleForConstantEntity | A rate rule cannot assign an entity declared to be constant.
|
RepeatedRule10304 | |
CircularRuleDependency | Circular dependencies involving rules and reactions are not permitted.
|
OneMathElementPerRule | A rule object may contain one <math> element.
|
AllowedAttributesOnAssignRule | Invalid attribute found on an AssignmentRule object.
|
AllowedAttributesOnRateRule | Invalid attribute found on a RateRule object.
|
AllowedAttributesOnAlgRule | Invalid attribute found on an AlgebraicRule object.
|
RuleCannotRef0DComp | Rule cannot reference 0D compartment.
|
CircularDependencyRateOf | Circular dependencies are not permitted in RateRule and KineticLaw objects.
|
ConstraintMathNotBoolean | A Constraint object's <math> must evaluate to a Boolean value.
|
IncorrectOrderInConstraint | Subobjects inside the Constraint object are not in the prescribed order.
|
ConstraintNotInXHTMLNamespace | A Constraint's Message subobject must be in the XHTML XML namespace.
|
ConstraintContainsXMLDecl | XML declarations are not permitted within Constraint's Message objects.
|
ConstraintContainsDOCTYPE | XML DOCTYPE elements are not permitted within Constraint's Message objects.
|
InvalidConstraintContent | Invalid content for a Constraint object's Message object.
|
OneMathElementPerConstraint | A Constraint object may contain one <math> element.
|
OneMessageElementPerConstraint | A Constraint object can only have one Message subobject.
|
AllowedAttributesOnConstraint | Invalid attribute found on Constraint object.
|
NoReactantsOrProducts | Cannot have a reaction with neither reactants nor products.
|
IncorrectOrderInReaction | Subobjects inside the Reaction object are not in the prescribed order.
|
EmptyListInReaction | Reaction components, if present, cannot be empty.
|
InvalidReactantsProductsList | Invalid object found in the list of reactants or products.
|
InvalidModifiersList | Invalid object found in the list of modifiers.
|
OneSubElementPerReaction | A Reaction object can only contain one of each allowed type of object.
|
CompartmentOnReaction | Invalid value for the Reaction 'compartment' attribute.
|
AllowedAttributesOnReaction | Invalid attribute for a Reaction object.
|
InvalidSpeciesReference | Invalid 'species' attribute value in SpeciesReference object.
|
RepeatedRule20611 | |
BothStoichiometryAndMath | The 'stoichiometry' attribute and StoichiometryMath subobject are mutually exclusive.
|
AllowedAttributesOnSpeciesReference | Invalid attribute found on the SpeciesReference object.
|
AllowedAttributesOnModifier | Invalid attribute found on the ModifierSpeciesReference object.
|
UndeclaredSpeciesRef | Unknown species referenced in the kinetic law <math> formula.
|
IncorrectOrderInKineticLaw | Incorrect ordering of components in the KineticLaw object.
|
EmptyListInKineticLaw | The list of parameters, if present, cannot be empty.
|
NonConstantLocalParameter | Parameters local to a KineticLaw object must have a 'constant' attribute value of 'true'.
|
SubsUnitsNoLongerValid | Attribute 'substanceUnits' is not supported in this Level+Version of SBML.
|
TimeUnitsNoLongerValid | Attribute 'timeUnits' is not supported in this Level+Version of SBML.
|
OneListOfPerKineticLaw | Only one ListOfLocalParameters object is permitted within a KineticLaw object.
|
OnlyLocalParamsInListOfLocalParams | Only LocalParameter, Notes and Annotation objects are allowed in ListOfLocalParameter objects.
|
AllowedAttributesOnListOfLocalParam | Invalid attribute found on the ListOfLocalParameters object.
|
OneMathPerKineticLaw | Only one <math> element is allowed in a KineticLaw object.
|
UndeclaredSpeciesInStoichMath | Unknown species referenced in the StoichiometryMath object's <math> formula.
|
AllowedAttributesOnKineticLaw | Invalid attribute found on the KineticLaw object.
|
AllowedAttributesOnListOfSpeciesRef | Invalid attribute found on the ListOfSpeciesReferences object.
|
AllowedAttributesOnListOfMods | Invalid attribute found on the ListOfModifiers object.
|
L3V2FastDeprecated | Fast attribute deprecated.
|
AllowedAttributesOnLocalParameter | Invalid attribute found on the LocalParameter object.
|
LocalParameterShadowsSpecies | Invalid attribute found on the LocalParameter object.
|
MissingTriggerInEvent | The Event object is missing a Trigger subobject.
|
TriggerMathNotBoolean | A Trigger object's <math> expression must evaluate to a Boolean value.
|
MissingEventAssignment | The Event object is missing an EventAssignment subobject.
|
TimeUnitsEvent | Units referenced by 'timeUnits' attribute are not compatible with units of time.
|
IncorrectOrderInEvent | Incorrect ordering of components in Event object.
|
ValuesFromTriggerTimeNeedDelay | Attribute 'useValuesFromTriggerTime'='false', but the Event object does not define a delay.
|
DelayNeedsValuesFromTriggerTime | The use of a Delay object requires the Event attribute 'useValuesFromTriggerTime'.
|
OneMathPerTrigger | A Trigger object may have one <math> element.
|
OneMathPerDelay | A Delay object may have one <math> element.
|
InvalidEventAssignmentVariable | Invalid 'variable' attribute value in Event object.
|
EventAssignmentForConstantEntity | An EventAssignment object cannot assign to a component having attribute 'constant'='true'.
|
OneMathPerEventAssignment | An EventAssignment object may have one <math> element.
|
AllowedAttributesOnEventAssignment | Invalid attribute found on the EventAssignment object.
|
OnlyOneDelayPerEvent | An Event object can only have one Delay subobject.
|
OneListOfEventAssignmentsPerEvent | An Event object can only have one ListOfEventAssignments subobject.
|
OnlyEventAssignInListOfEventAssign | Only EventAssignment, Notes and Annotation objects are allowed in ListOfEventAssignments.
|
AllowedAttributesOnListOfEventAssign | Invalid attribute found on the ListOfEventAssignments object.
|
AllowedAttributesOnEvent | Invalid attribute found on the Event object.
|
AllowedAttributesOnTrigger | Invalid attribute found on the Trigger object.
|
AllowedAttributesOnDelay | Invalid attribute found on the Delay object.
|
PersistentNotBoolean | The Trigger attribute 'persistent' must evaluate to a Boolean value.
|
InitialValueNotBoolean | The Trigger attribute 'initialValue' must evaluate to a Boolean value.
|
OnlyOnePriorityPerEvent | An Event object can only have one Priority subobject.
|
OneMathPerPriority | A Priority object may have one <math> element.
|
AllowedAttributesOnPriority | Invalid attribute found on the Priority object.
|
GeneralWarningNotSpecified | Unknown error.
|
CompartmentShouldHaveSize | It's best to define a size for every compartment in a model.
|
SpeciesShouldHaveValue | It's best to define an initial amount or initial concentration for every species in a model.
|
ParameterShouldHaveUnits | It's best to declare units for every parameter in a model.
|
ParameterShouldHaveValue | It's best to declare values for every parameter in a model.
|
LocalParameterShadowsId | Local parameters defined within a kinetic law shadow global object symbols.
|
LibSBMLAdditionalCodesLowerBound | Lower boundary of libSBML-specific diagnostic codes.
|
CannotConvertToL1V1 | Cannot convert to SBML Level 1 Version 1.
|
NoEventsInL1 | SBML Level 1 does not support events.
|
NoFunctionDefinitionsInL1 | SBML Level 1 does not support function definitions.
|
NoConstraintsInL1 | SBML Level 1 does not support constraints.
|
NoInitialAssignmentsInL1 | SBML Level 1 does not support initial assignments.
|
NoSpeciesTypesInL1 | SBML Level 1 does not support species types.
|
NoCompartmentTypeInL1 | SBML Level 1 does not support compartment types.
|
NoNon3DCompartmentsInL1 | SBML Level 1 only supports three-dimensional compartments.
|
NoFancyStoichiometryMathInL1 | SBML Level 1 does not support non-integer nor non-rational stoichiometry formulas.
|
NoNonIntegerStoichiometryInL1 | SBML Level 1 does not support non-integer 'stoichiometry' attribute values.
|
NoUnitMultipliersOrOffsetsInL1 | SBML Level 1 does not support multipliers or offsets in unit definitions.
|
SpeciesCompartmentRequiredInL1 | In SBML Level 1, a value for 'compartment' is mandatory in species definitions.
|
NoSpeciesSpatialSizeUnitsInL1 | SBML Level 1 does not support species 'spatialSizeUnits' settings.
|
NoSBOTermsInL1 | SBML Level 1 does not support the 'sboTerm' attribute.
|
StrictUnitsRequiredInL1 | SBML Level 1 requires strict unit consistency.
|
ConversionFactorNotInL1 | SBML Level 1 does not support the 'conversionFactor' attribute.
|
CompartmentNotOnL1Reaction | SBML Level 1 does not support the 'compartment' attribute on Reaction objects.
|
ExtentUnitsNotSubstance | Units of extent must be compatible with units of substance.
|
GlobalUnitsNotDeclared | Global units must be refer to unit kind or unitDefinition.
|
HasOnlySubstanceUnitsNotinL1 | The concept of hasOnlySubstanceUnits was not available in SBML Level 1.
|
AvogadroNotSupported | Avogadro not supported in Levels 2 and 1.
|
NoConstraintsInL2v1 | SBML Level 2 Version 1 does not support Constraint objects.
|
NoInitialAssignmentsInL2v1 | SBML Level 2 Version 1 does not support InitialAssignment objects.
|
NoSpeciesTypeInL2v1 | SBML Level 2 Version 1 does not support SpeciesType objects.
|
NoCompartmentTypeInL2v1 | SBML Level 2 Version 1 does not support CompartmentType objects.
|
NoSBOTermsInL2v1 | SBML Level 2 Version 1 does not support the 'sboTerm' attribute.
|
NoIdOnSpeciesReferenceInL2v1 | SBML Level 2 Version 1 does not support the 'id' attribute on SpeciesReference objects.
|
NoDelayedEventAssignmentInL2v1 | SBML Level 2 Version 1 does not support the 'useValuesFromTriggerTime' attribute.
|
StrictUnitsRequiredInL2v1 | SBML Level 2 Version 1 requires strict unit consistency.
|
IntegerSpatialDimensions | SBML Level 2 Version 1 requires that compartments have spatial dimensions of 0-3.
|
StoichiometryMathNotYetSupported | Conversion to StoichiometryMath objects not yet supported.
|
PriorityLostFromL3 | SBML Level 2 Version 1 does not support priorities on Event objects.
|
NonPersistentNotSupported | SBML Level 2 Version 1 does not support the 'persistent' attribute on Trigger objects.
|
InitialValueFalseEventNotSupported | SBML Level 2 Version 1 does not support the 'initialValue' attribute on Trigger objects.
|
SBOTermNotUniversalInL2v2 | The 'sboTerm' attribute is invalid for this component in SBML Level 2 Version 2.
|
NoUnitOffsetInL2v2 | This Level+Version of SBML does not support the 'offset' attribute on Unit objects.
|
NoKineticLawTimeUnitsInL2v2 | This Level+Version of SBML does not support the 'timeUnits' attribute on KineticLaw objects.
|
NoKineticLawSubstanceUnitsInL2v2 | This Level+Version of SBML does not support the 'substanceUnits' attribute on KineticLaw objects.
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NoDelayedEventAssignmentInL2v2 | This Level+Version of SBML does not support the 'useValuesFromTriggerTime' attribute.
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ModelSBOBranchChangedBeyondL2v2 | The allowable 'sboTerm' attribute values for Model objects differ for this SBML Level+Version.
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StrictUnitsRequiredInL2v2 | SBML Level 2 Version 2 requires strict unit consistency.
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StrictSBORequiredInL2v2 | SBML Level 2 Version 2 requires strict SBO term consistency.
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DuplicateAnnotationInvalidInL2v2 | Duplicate top-level annotations are invalid in SBML Level 2 Version 2.
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NoUnitOffsetInL2v3 | This Level+Version of SBML does not support the 'offset' attribute on Unit objects.
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NoKineticLawTimeUnitsInL2v3 | This Level+Version of SBML does not support the 'timeUnits' attribute on KineticLaw objects.
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NoKineticLawSubstanceUnitsInL2v3 | This Level+Version of SBML does not support the 'substanceUnits' attribute on KineticLaw objects.
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NoSpeciesSpatialSizeUnitsInL2v3 | This Level+Version of SBML does not support the 'spatialSizeUnit' attribute on Species objects.
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NoEventTimeUnitsInL2v3 | This Level+Version of SBML does not support the 'timeUnits' attribute on Event objects.
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NoDelayedEventAssignmentInL2v3 | This Level+Version of SBML does not support the 'useValuesFromTriggerTime' attribute.
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ModelSBOBranchChangedBeyondL2v3 | The allowable 'sboTerm' attribute values for Model objects differ for this SBML Level+Version.
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StrictUnitsRequiredInL2v3 | SBML Level 2 Version 3 requires strict unit consistency.
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StrictSBORequiredInL2v3 | SBML Level 2 Version 3 requires strict SBO term consistency.
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DuplicateAnnotationInvalidInL2v3 | Duplicate top-level annotations are invalid in SBML Level 2 Version 3.
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NoUnitOffsetInL2v4 | This Level+Version of SBML does not support the 'offset' attribute on Unit objects.
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NoKineticLawTimeUnitsInL2v4 | This Level+Version of SBML does not support the 'timeUnits' attribute on KineticLaw objects.
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NoKineticLawSubstanceUnitsInL2v4 | This Level+Version of SBML does not support the 'substanceUnits' attribute on KineticLaw objects.
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NoSpeciesSpatialSizeUnitsInL2v4 | This Level+Version of SBML does not support the 'spatialSizeUnit' attribute on Species objects.
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NoEventTimeUnitsInL2v4 | This Level+Version of SBML does not support the 'timeUnits' attribute on Event objects.
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ModelSBOBranchChangedInL2v4 | The allowable 'sboTerm' attribute values for Model objects differ for this SBML Level+Version.
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DuplicateAnnotationInvalidInL2v4 | Duplicate top-level annotations are invalid in SBML Level 2 Version 4.
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NoSpeciesTypeInL3v1 | SBML Level 3 Version 1 does not support SpeciesType objects.
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NoCompartmentTypeInL3v1 | SBML Level 3 Version 1 does not support CompartmentType objects.
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NoUnitOffsetInL3v1 | This Level+Version of SBML does not support the 'offset' attribute on Unit objects.
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NoKineticLawTimeUnitsInL3v1 | This Level+Version of SBML does not support the 'timeUnits' attribute on KineticLaw objects.
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NoKineticLawSubstanceUnitsInL3v1 | This Level+Version of SBML does not support the 'substanceUnits' attribute on KineticLaw objects.
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NoSpeciesSpatialSizeUnitsInL3v1 | This Level+Version of SBML does not support the 'spatialSizeUnit' attribute on Species objects.
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NoEventTimeUnitsInL3v1 | This Level+Version of SBML does not support the 'timeUnits' attribute on Event objects.
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ModelSBOBranchChangedInL3v1 | The allowable 'sboTerm' attribute values for Model objects differ for this SBML Level+Version.
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DuplicateAnnotationInvalidInL3v1 | Duplicate top-level annotations are invalid in SBML Level 3 Version 1.
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NoCompartmentOutsideInL3v1 | This Level+Version of SBML does not support the 'outside' attribute on Compartment objects.
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NoStoichiometryMathInL3v1 | This Level+Version of SBML does not support the StoichiometryMath object.
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DoubleExponentNotSupported | Exponent of type double not supported in Levels 2 and 1.
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MathMLElementNotSupported | This MathML element is only permitted in L3V2.
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EmptyListOfElementNotSupported | Empty 'ListOf' element is only permitted in L3V2.
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MissingMathElementNotSupported | Missing <math> element is only permitted in L3V2.
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MissingTriggerElementNotSupported | missing <trigger> element is only permitted in L3V2.
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BooleanNumericDiscrepancy | Interchange of Boolean and numeric values only permitted in L3V2.
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IdNameSBaseInL3V2 | Conversion will lose attributes only available in L3V2 and higher.
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MissingParticipantsNotSupported | Omission of both <listOfReactants> and <listOfProducts> is only valid in L3V2.
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ConvertibleMathInitialAssignment | Some L3V2-specific MathML elements are not permitted in InitialAssignment objects.
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FastReactionsNotSupported | Conversion of reactions employing the 'fast' attribute is not supported.
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SpeciesRefIdInMathMLNotSupported | This MathML element is only permitted in L3V2.
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InvalidSBMLLevelVersion | Unknown Level+Version combination of SBML.
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InvalidPackageLevelVersion | Invalid package Level+Version combination of SBML.
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AnnotationNotesNotAllowedLevel1 | Annotation objects on the SBML container element are not permitted in SBML Level 1.
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InvalidRuleOrdering | Invalid ordering of rules.
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RequiredPackagePresent | The SBML document requires an SBML Level 3 package unavailable in this software.
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UnrequiredPackagePresent | The SBML document uses an SBML Level 3 package unavailable in this software.
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PackageRequiredShouldBeFalse | This package expects required to be false.
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SubsUnitsAllowedInKL | Disallowed value for attribute 'substanceUnits' on KineticLaw object.
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TimeUnitsAllowedInKL | Disallowed value for attribute 'timeUnits' on KineticLaw object.
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FormulaInLevel1KL | Only predefined functions are allowed in SBML Level 1 formulas.
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L3SubstanceUnitsOnModel | Invalid 'substanceUnits' attribute value.
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StoichiometryMathMissingMath | The <stoichiometryMath> element must contain a <math> element.
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TimeUnitsRemoved | This Level+Version of SBML does not support the 'timeUnits' attribute on Event objects.
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BadMathML | Invalid MathML expression.
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FailedMathMLReadOfDouble | Missing or invalid floating-point number in MathML expression.
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FailedMathMLReadOfInteger | Missing or invalid integer in MathML expression.
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FailedMathMLReadOfExponential | Missing or invalid exponential expression in MathML.
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FailedMathMLReadOfRational | Missing or invalid rational expression in MathML.
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BadMathMLNodeType | Invalid MathML element.
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InvalidMathMLAttribute | Invalid MathML attribute.
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NoTimeSymbolInFunctionDef | Use of <csymbol> for 'time' not allowed within FunctionDefinition objects.
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NoBodyInFunctionDef | There must be a <lambda> body within the <math> element of a FunctionDefinition object.
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DanglingUnitSIdRef | Units must refer to valid unit or unitDefinition.
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RDFMissingAboutTag | RDF missing the <about> tag.
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RDFEmptyAboutTag | RDF empty <about> tag.
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RDFAboutTagNotMetaid | RDF <about> tag is not metaid.
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RDFNotCompleteModelHistory | RDF does not contain valid ModelHistory.
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RDFNotModelHistory | RDF does not result in a ModelHistory.
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AnnotationNotElement | Annotation must contain element.
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NestedAnnotationNotAllowed | Nested annotations not allowed.
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InconsistentArgUnitsWarnings | This is an internal error that reverts to 10501.
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InconsistentPowerUnitsWarnings | This is an internal error that reverts to 10501.
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InconsistentExponUnitsWarnings | This is an internal error that reverts to 10501.
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UndeclaredUnits | Missing unit declarations on parameters or literal numbers in expression.
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UndeclaredTimeUnitsL3 | Unable to verify consistency of units: the unit of time has not been declared.
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UndeclaredExtentUnitsL3 | Unable to verify consistency of units: the units of reaction extent have not been declared.
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UndeclaredObjectUnitsL3 | Unable to verify consistency of units: encountered a model entity with no declared units.
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CannotVerifyUnitsObjectNoMath | Unable to verify consistency of units: encountered an object with no <math> element.
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UnrecognisedSBOTerm | Unrecognized 'sboTerm' attribute value.
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ObseleteSBOTerm | Obsolete 'sboTerm' attribute value.
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IncorrectCompartmentSpatialDimensions | In SBML Level 1, only three-dimensional compartments are allowed.
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CompartmentTypeNotValidAttribute | CompartmentType objects are not available in this Level+Version of SBML.
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ConstantNotValidAttribute | This Level+Version of SBML does not support the 'constant' attribute on this component.
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MetaIdNotValidAttribute | Attribute 'metaid' is not available in SBML Level 1.
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SBOTermNotValidAttributeBeforeL2V3 | The 'sboTerm' attribute is not available on this component before SBML Level 2 Version 3.
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InvalidL1CompartmentUnits | Invalid units for a compartment in SBML Level 1.
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L1V1CompartmentVolumeReqd | In SBML Level 1, a compartment's volume must be specified.
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CompartmentTypeNotValidComponent | CompartmentType objects are not available in this Level+Version of SBML.
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ConstraintNotValidComponent | Constraint objects are not available in this Level+Version of SBML.
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EventNotValidComponent | Event objects are not available in this Level+Version of SBML.
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SBOTermNotValidAttributeBeforeL2V2 | The 'sboTerm' attribute is invalid for this component before Level 2 Version 2.
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FuncDefNotValidComponent | FunctionDefinition objects are not available in this Level+Version of SBML.
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InitialAssignNotValidComponent | InitialAssignment objects are not available in this Level+Version of SBML.
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VariableNotValidAttribute | Attribute 'variable' is not available on this component in this Level+Version of SBML.
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UnitsNotValidAttribute | Attribute 'units' is not available on this component in this Level+Version of SBML.
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ConstantSpeciesNotValidAttribute | Attribute 'constant' is not available on Species objects in SBML Level 1.
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SpatialSizeUnitsNotValidAttribute | Attribute 'spatialSizeUnits' is not available on Species objects in SBML Level 1.
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SpeciesTypeNotValidAttribute | Attribute 'speciesType' is not available on Species objects in SBML Level 1.
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HasOnlySubsUnitsNotValidAttribute | Attribute 'hasOnlySubstanceUnits' is not available on Species objects in SBML Level 1.
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IdNotValidAttribute | Attribute 'id' is not available on SpeciesReference objects in SBML Level 1.
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NameNotValidAttribute | Attribute 'name' is not available on SpeciesReference objects in SBML Level 1.
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SpeciesTypeNotValidComponent | The SpeciesType object is not supported in SBML Level 1.
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StoichiometryMathNotValidComponent | The StoichiometryMath object is not supported in SBML Level 1.
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MultiplierNotValidAttribute | Attribute 'multiplier' on Unit objects is not supported in SBML Level 1.
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OffsetNotValidAttribute | Attribute 'offset' on Unit objects is only available in SBML Level 2 Version 1.
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L3SpatialDimensionsUnset | No value given for 'spatialDimensions' attribute; assuming a value of 3.
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OperationInterrupted | Operation was interrupted by the user.
|
UnknownCoreAttribute | Encountered an unknown attribute in the SBML Core namespace.
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UnknownPackageAttribute | Encountered an unknown attribute in an SBML Level 3 package namespace.
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PackageConversionNotSupported | Conversion of SBML Level 3 package constructs is not yet supported.
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InvalidTargetLevelVersion | The requested SBML Level/Version combination is not known to exist.
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L3NotSupported | SBML Level 3 is not yet supported.
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SBMLCodesUpperBound | Upper boundary of libSBML-specific diagnostic codes.
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